Class
SeedSet
Manages seeds for local chaining and merging algorithms.
Include Headers
seqan/seeds.h
Parameters
Type that saves the positions and upper/lower bounds. Remarks: Positive and negative values are needed. | |
The Seed specialization. | |
The scoring sheme to use. |
Specializations
| SeedSet that uses seeds without scores. | |
| SeedSet that uses scored Seeds. |
Metafunctions
| Type of iterator objects that are used to traverse the container. | |
| The spec of a class. | |
| Type of the items in the container. | |
| Type of the items in the container. |
Member Functions
| Constructor |
Functions
| Adds a seed to an existing set. | |
| Adds several seeds to an existing set. If a merging or chaining algorithm is used seeds are added if the merging or chaining fails. | |
| The begin of a container. | |
| The begin of a container. | |
| The end of a container. | |
| The end of a container. | |
| Sets the maximal distance between two seed during a chaining process. | |
| Sets the minimum length for a seed to be saved permanently. | |
| Sets the maximal distance between two seed during a chaining process. | |
| Sets the minimum length for a seed to be saved permanently. |
SeqAn - Sequence Analysis Library - www.seqan.de
