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| | Cycle (Molecule *molecule) |
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| virtual | ~Cycle () |
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| void | Simplify () |
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| virtual void | Erase (Atom *pAtom1, Atom *pAtom2) |
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| virtual void | Insert (Atom *pAtom1, Atom *pAtom2, Chain &chain) |
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| bool | IsBetterForBonds (Cycle *pCycle) |
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| void | GetAngles2D (Bond *pBond, double *a1, double *a2) |
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| int | GetFusedBonds () |
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| unsigned | GetBridgeLength (Cycle *c, Atom *atom, Bond *bond) |
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| std::string | Name () |
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| | Chain (Bond *pBond, Atom *pAtom=NULL, TypeId Type=ChainType) |
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| | Chain (Molecule *molecule, Bond *pBond, TypeId Type=ChainType) |
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| | Chain (Molecule *molecule, Atom *pAtom, TypeId Type=ChainType) |
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| virtual | ~Chain () |
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| void | FindCycles (Atom *pAtom) |
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| bool | FindCycle (Atom *pAtom, Bond *pBond) |
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| void | Extract (Atom *pAtom1, Atom *pAtom2, Chain &chain) |
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| void | Reverse () |
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| void | AddBond (Atom *start, Atom *end) |
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| unsigned | GetUnsaturations () |
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| unsigned | GetHeteroatoms () |
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| bool | Contains (Atom *pAtom) |
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| bool | Contains (Bond *pBond) |
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| unsigned | GetLength () |
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| double | GetMeanBondLength () |
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| Atom * | GetFirstAtom () |
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| Atom * | GetNextAtom (Atom *pAtom) |
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| unsigned | BuildLength (unsigned *cycle_size=NULL, unsigned *cycle_pos=NULL) |
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| | Object (TypeId Id=OtherType) |
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| virtual | ~Object () |
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| TypeId | GetType () const |
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| void | SetId (gchar const *Id) |
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| char const * | GetId () const |
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| virtual void | AddChild (Object *object) |
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| Object * | GetMolecule () const |
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| Object * | GetReaction () const |
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| Object * | GetGroup () const |
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| Document * | GetDocument () const |
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| Application * | GetApplication () const |
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| Object * | GetParentOfType (TypeId Id) const |
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| Object * | GetChild (const gchar *Id) const |
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| Object * | GetFirstChild (std::map< std::string, Object * >::iterator &i) |
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| Object * | GetNextChild (std::map< std::string, Object * >::iterator &i) |
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| Object * | GetDescendant (const char *Id) const |
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| Object * | GetParent () const |
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| void | SetParent (Object *Parent) |
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| virtual xmlNodePtr | Save (xmlDocPtr xml) const |
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| virtual bool | Load (xmlNodePtr node) |
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| virtual bool | GetCoords (double *x, double *y, double *z=NULL) const |
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| virtual void | Move (double x, double y, double z=0.) |
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| virtual void | Transform2D (Matrix2D &m, double x, double y) |
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| bool | SaveChildren (xmlDocPtr xml, xmlNodePtr node) const |
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| void | SaveId (xmlNodePtr node) const |
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| xmlNodePtr | GetNodeByProp (xmlNodePtr node, char const *Property, char const *Id) |
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| xmlNodePtr | GetNextNodeByProp (xmlNodePtr node, char const *Property, char const *Id) |
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| xmlNodePtr | GetNodeByName (xmlNodePtr node, char const *Name) |
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| xmlNodePtr | GetNextNodeByName (xmlNodePtr node, char const *Name) |
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| bool | HasChildren () const |
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| unsigned | GetChildrenNumber () const |
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| virtual Object * | GetAtomAt (double x, double y, double z=0.) |
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| virtual bool | Build (std::set< Object * > const &Children) throw (std::invalid_argument) |
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| virtual double | GetYAlign () |
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| virtual bool | BuildContextualMenu (UIManager *uim, Object *object, double x, double y) |
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| void | EmitSignal (SignalId Signal) |
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| virtual bool | OnSignal (SignalId Signal, Object *Child) |
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| void | Lock (bool state=true) |
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| bool | IsLocked () |
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| Object * | GetFirstLink (std::set< Object * >::iterator &i) |
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| Object * | GetNextLink (std::set< Object * >::iterator &i) |
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| void | Link (Object *object) |
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| void | Unlink (Object *object) |
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| virtual void | OnUnlink (Object *object) |
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| void | GetPossibleAncestorTypes (std::set< TypeId > &types) const |
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| virtual bool | SetProperty (unsigned property, char const *value) |
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| virtual std::string | GetProperty (unsigned property) const |
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| virtual void | OnLoaded () |
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| void | SetDirty (bool dirty=true) |
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| virtual void | Clear () |
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| std::string | Identity () |
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| virtual char const * | HasPropertiesDialog () const |
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| virtual bool | CanSelect () const |
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| virtual void | NotifyEmpty () |
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| void | ShowPropertiesDialog () |
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| bool | GetDirty (void) const |
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| static TypeId | AddType (std::string TypeName, Object *(*CreateFunc)(), TypeId id=OtherType) |
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| static void | AddAlias (TypeId id, std::string TypeName) |
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| static Object * | CreateObject (const std::string &TypeName, Object *parent=NULL) |
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| static TypeId | GetTypeId (const std::string &Name) |
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| static std::string | GetTypeName (TypeId Id) |
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| static void | AddMenuCallback (TypeId Id, BuildMenuCb cb) |
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| static void | AddRule (TypeId type1, RuleId rule, TypeId type2) |
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| static void | AddRule (const std::string &type1, RuleId rule, const std::string &type2) |
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| static const std::set< TypeId > & | GetRules (TypeId type, RuleId rule) |
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| static const std::set< TypeId > & | GetRules (const std::string &type, RuleId rule) |
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| static void | SetCreationLabel (TypeId Id, std::string Label) |
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| static const std::string & | GetCreationLabel (TypeId Id) |
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| static const std::string & | GetCreationLabel (const std::string &TypeName) |
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| static SignalId | CreateNewSignalId () |
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| virtual Dialog * | BuildPropertiesDialog () |
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| std::map< Atom *, ChainElt > | m_Bonds |
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| Molecule * | m_Molecule |
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Represents a cycle.
Definition at line 36 of file cycle.h.